Section: Dissemination

Teaching - Supervision - Juries

Teaching

We have and we will go on having trained a group of good multi-disciplinary students both at the Master and PhD level. Being part of this community as a serious training group is obviously an asset. Our project is also very much involved in two major student programs in France: the Master Ami2b at Paris-Saclay (previously Bibs (Bioinformatique et Biostatistique) at Université Paris-Sud/École Polytechnique) and the parcours d’Approfondissement en Bioinformatique at École Polytechnique.

At Ecole Polytechnique, M. Régnier is in charge of M1 and M2. Most team members are teaching in this master program.

Beyond the plateau de Saclay, Yann Ponty taught 12h at the M2 level for University Pierre et Marie Curie in the BIM Master program.

Supervision

• HDR

  • L. Mouchard Contributions algorithmiques à l’analyse des séquences génomiques : J.-M. Steyaert

• PhD

  • Vladimir Reinharz, Algorithmic properties of evolved structured RNAs, McGill University (Montréal, Canada), July 2016, supervised by J. Waldispühl (CS Dept, McGill Univ.) and Yann Ponty

• PhD in progress

  • Alice Héliou, Identification et caractérisation d’ARN circulaires dans des séquences NGS, Ecole Polytechnique, Encadrant(e|s): Mireille Régnier and Hubert Becker

  • Wei Wang, Homology based approaches for predicting 3D structure of RNA molecules, Univ. Paris XI, Encadrant(e|s): Alain Denise and Yann Ponty;

  • Amélie Héliou, Game theory and conformation sampling for multi-scale and multi-body macromolecule docking, Ecole Polytechnique, Encadrant(e|s): Johanne Cohen;

  • Afaf Saaidi, Differential analysis of RNA SHAPE probing data, Ecole Polytechnique, Encadrants: Yann Ponty and Mireille Régnier.

  • Antoine Soulé, Evolutionary study of RNA-RNA interactions in yeast , Ecole Polytechnique, Encadrants: Jean-Marc Steyaert and J. Waldispuhl (U. McGill, Canada);

  • Jorgelindo Moreira da Veiga, Caractérisation dynamique et optimisation des flux métaboliques , Ecole Polytechnique, Encadrants: L. Schwartz (AP-HP)Sabine Peres (U. Paris-Sud)

Juries

• HDR

  • S. Bérard Histoires évolutives et autres comptes : M. Régnier

  • M. Magnin Contributions à l'élaboration de connaissances qualitatives en bio-informatique : M. Régnier

• PhD

  • Manuel Lafond, Comparative Genomics, Université de Montréal, Canada, August 2016

  • Karen Druart, Computational Structural Biology, Ecole Polytechnique, December 2016